Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'SimpleEntity'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType 1 INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE EntityCompartment PhysicalEntity ALL INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
referenceEntity 1 INSTANCE ReferenceMolecule SimpleEntity ALL INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species 1 INSTANCE Species SimpleEntity ALL INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'SimpleEntity' instances

Class name Attribute name Cardinality
Regulation regulator 1
Requirement regulator 1
PositiveRegulation regulator 1
NegativeRegulation regulator 1
Polymer repeatedUnit +
ReactionlikeEvent requiredInputComponent +
FailedReaction requiredInputComponent +
BlackBoxEvent requiredInputComponent +
Polymerisation requiredInputComponent +
Depolymerisation requiredInputComponent +
Reaction requiredInputComponent +
EntityFunctionalStatus physicalEntity 1
CatalystActivity physicalEntity 1
VertexSearchableTerm termProvider +
ConcurrentEventSet focusEntity +
DefinedSet inferredTo +
GenomeEncodedEntity inferredTo +
Polymer inferredTo +
PhysicalEntity inferredTo +
EntitySet inferredTo +
SimpleEntity inferredTo +
OtherEntity inferredTo +
Complex inferredTo +
EntityWithAccessionedSequence inferredTo +
CandidateSet inferredTo +
OpenSet inferredTo +
CandidateSet hasCandidate +
CatalystActivity activeUnit +
DefinedSet hasMember +
EntitySet hasMember +
OpenSet hasMember +
CandidateSet hasMember +
Complex hasComponent +
SimpleEntity inferredFrom +
OtherEntity inferredFrom +
EntitySet inferredFrom +
PhysicalEntity inferredFrom +
Polymer inferredFrom +
GenomeEncodedEntity inferredFrom +
DefinedSet inferredFrom +
OpenSet inferredFrom +
CandidateSet inferredFrom +
EntityWithAccessionedSequence inferredFrom +
Complex inferredFrom +
ReactionlikeEvent output +
FailedReaction output +
BlackBoxEvent output +
Reaction output +
Polymerisation output +
Depolymerisation output +
BlackBoxEvent input +
FailedReaction input +
ReactionlikeEvent input +
Depolymerisation input +
Polymerisation input +
Reaction input +
EntityVertex representedInstance 1
_Deleted replacementInstances +
Depolymerisation entityOnOtherCell +
Polymerisation entityOnOtherCell +
Reaction entityOnOtherCell +
Complex entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
FailedReaction entityOnOtherCell +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.