Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'DefinedSet'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType 1 INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE Compartment PhysicalEntity   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasMember + INSTANCE PhysicalEntity EntitySet ALL INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
isOrdered 1 OTHER N/A EntitySet   ENUM('TRUE','FALSE')
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
relatedSpecies + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'DefinedSet' instances

Class name Attribute name Cardinality
CandidateSet hasMember +
DefinedSet hasMember +
EntitySet hasMember +
VertexSearchableTerm termProvider +
Depolymerisation requiredInputComponent +
Polymerisation requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
Reaction requiredInputComponent +
BlackBoxEvent requiredInputComponent +
FailedReaction requiredInputComponent +
Polymer repeatedUnit +
Polymer inferredFrom +
Drug inferredFrom +
OtherEntity inferredFrom +
Complex inferredFrom +
CandidateSet inferredFrom +
EntityWithAccessionedSequence inferredFrom +
SimpleEntity inferredFrom +
EntitySet inferredFrom +
PhysicalEntity inferredFrom +
ChemicalDrug inferredFrom +
ProteinDrug inferredFrom +
GenomeEncodedEntity inferredFrom +
RNADrug inferredFrom +
DefinedSet inferredFrom +
Depolymerisation output +
Polymerisation output +
ReactionlikeEvent output +
Reaction output +
FailedReaction output +
BlackBoxEvent output +
EntityVertex representedInstance 1
CatalystActivity physicalEntity 1
EntityFunctionalStatus diseaseEntity 1
NegativeGeneExpressionRegulation activeUnit +
Requirement activeUnit +
PositiveRegulation activeUnit +
CatalystActivity activeUnit +
NegativeRegulation activeUnit +
Regulation activeUnit +
PositiveGeneExpressionRegulation activeUnit +
ChemicalDrug inferredTo +
ProteinDrug inferredTo +
GenomeEncodedEntity inferredTo +
RNADrug inferredTo +
DefinedSet inferredTo +
Drug inferredTo +
Polymer inferredTo +
OtherEntity inferredTo +
Complex inferredTo +
EntityWithAccessionedSequence inferredTo +
CandidateSet inferredTo +
SimpleEntity inferredTo +
PhysicalEntity inferredTo +
EntitySet inferredTo +
InterChainCrosslinkedResidue modification 1
CrosslinkedResidue modification 1
IntraChainCrosslinkedResidue modification 1
GroupModifiedResidue modification 1
Complex hasComponent +
NegativeRegulation regulator 1
PositiveGeneExpressionRegulation regulator 1
Regulation regulator 1
PositiveRegulation regulator 1
Requirement regulator 1
NegativeGeneExpressionRegulation regulator 1
CandidateSet hasCandidate +
BlackBoxEvent input +
FailedReaction input +
Reaction input +
ReactionlikeEvent input +
Depolymerisation input +
Polymerisation input +
Reaction entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
FailedReaction entityOnOtherCell +
Complex entityOnOtherCell +
Depolymerisation entityOnOtherCell +
Polymerisation entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
EntityFunctionalStatus normalEntity 1
_Deleted replacementInstances +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.