Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'DefinedSet'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType 1 INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE Compartment PhysicalEntity   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasMember + INSTANCE PhysicalEntity EntitySet ALL INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
isOrdered 1 OTHER N/A EntitySet   ENUM('TRUE','FALSE')
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
relatedSpecies + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'DefinedSet' instances

Class name Attribute name Cardinality
CatalystActivity physicalEntity 1
EntityFunctionalStatus physicalEntity 1
Complex hasComponent +
Polymerisation requiredInputComponent +
FailedReaction requiredInputComponent +
Reaction requiredInputComponent +
BlackBoxEvent requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
Depolymerisation requiredInputComponent +
EntityVertex representedInstance 1
VertexSearchableTerm termProvider +
Depolymerisation entityOnOtherCell +
Complex entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
Reaction entityOnOtherCell +
FailedReaction entityOnOtherCell +
Polymerisation entityOnOtherCell +
Depolymerisation output +
ReactionlikeEvent output +
BlackBoxEvent output +
Reaction output +
Polymerisation output +
FailedReaction output +
_Deleted replacementInstances +
CatalystActivity activeUnit +
NegativeGeneExpressionRegulation activeUnit +
PositiveRegulation activeUnit +
NegativeRegulation activeUnit +
Requirement activeUnit +
Regulation activeUnit +
PositiveGeneExpressionRegulation activeUnit +
ConcurrentEventSet focusEntity +
Polymer repeatedUnit +
CandidateSet hasCandidate +
Regulation regulator 1
PositiveGeneExpressionRegulation regulator 1
PositiveRegulation regulator 1
NegativeGeneExpressionRegulation regulator 1
Requirement regulator 1
NegativeRegulation regulator 1
CandidateSet hasMember +
EntitySet hasMember +
OpenSet hasMember +
DefinedSet hasMember +
GenomeEncodedEntity inferredTo +
EntityWithAccessionedSequence inferredTo +
OpenSet inferredTo +
Polymer inferredTo +
DefinedSet inferredTo +
EntitySet inferredTo +
PhysicalEntity inferredTo +
Complex inferredTo +
RNADrug inferredTo +
SimpleEntity inferredTo +
ChemicalDrug inferredTo +
OtherEntity inferredTo +
Drug inferredTo +
ProteinDrug inferredTo +
CandidateSet inferredTo +
IntraChainCrosslinkedResidue modification 1
GroupModifiedResidue modification 1
CrosslinkedResidue modification 1
InterChainCrosslinkedResidue modification 1
ProteinDrug inferredFrom +
CandidateSet inferredFrom +
Drug inferredFrom +
ChemicalDrug inferredFrom +
OtherEntity inferredFrom +
SimpleEntity inferredFrom +
RNADrug inferredFrom +
EntityWithAccessionedSequence inferredFrom +
GenomeEncodedEntity inferredFrom +
Complex inferredFrom +
EntitySet inferredFrom +
Polymer inferredFrom +
OpenSet inferredFrom +
DefinedSet inferredFrom +
PhysicalEntity inferredFrom +
FailedReaction input +
Polymerisation input +
Reaction input +
BlackBoxEvent input +
ReactionlikeEvent input +
Depolymerisation input +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.