Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'GenomeEncodedEntity'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType 1 INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE Compartment PhysicalEntity ALL INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity ANY TEXT
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species 1 INSTANCE Species
Taxon
GenomeEncodedEntity ALL INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'GenomeEncodedEntity' instances

Class name Attribute name Cardinality
SimpleEntity inferredTo +
Drug inferredTo +
GenomeEncodedEntity inferredTo +
Polymer inferredTo +
EntityWithAccessionedSequence inferredTo +
ProteinDrug inferredTo +
ChemicalDrug inferredTo +
EntitySet inferredTo +
OtherEntity inferredTo +
CandidateSet inferredTo +
PhysicalEntity inferredTo +
DefinedSet inferredTo +
RNADrug inferredTo +
Complex inferredTo +
Polymer repeatedUnit +
DefinedSet hasMember +
EntitySet hasMember +
CandidateSet hasMember +
Drug inferredFrom +
SimpleEntity inferredFrom +
GenomeEncodedEntity inferredFrom +
Polymer inferredFrom +
EntityWithAccessionedSequence inferredFrom +
DefinedSet inferredFrom +
RNADrug inferredFrom +
Complex inferredFrom +
ProteinDrug inferredFrom +
EntitySet inferredFrom +
ChemicalDrug inferredFrom +
OtherEntity inferredFrom +
CandidateSet inferredFrom +
PhysicalEntity inferredFrom +
Complex hasComponent +
ReactionlikeEvent output +
BlackBoxEvent output +
Reaction output +
Polymerisation output +
FailedReaction output +
Depolymerisation output +
_Deleted replacementInstances +
ReactionlikeEvent entityOnOtherCell +
Reaction entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
Polymerisation entityOnOtherCell +
FailedReaction entityOnOtherCell +
Complex entityOnOtherCell +
Depolymerisation entityOnOtherCell +
VertexSearchableTerm termProvider +
Requirement activeUnit +
Regulation activeUnit +
PositiveRegulation activeUnit +
CatalystActivity activeUnit +
PositiveGeneExpressionRegulation activeUnit +
NegativeRegulation activeUnit +
NegativeGeneExpressionRegulation activeUnit +
EntityFunctionalStatus normalEntity 1
EntityFunctionalStatus diseaseEntity 1
PositiveRegulation regulator 1
Regulation regulator 1
Requirement regulator 1
NegativeGeneExpressionRegulation regulator 1
NegativeRegulation regulator 1
PositiveGeneExpressionRegulation regulator 1
EntityVertex representedInstance 1
CatalystActivity physicalEntity 1
Depolymerisation input +
FailedReaction input +
Polymerisation input +
ReactionlikeEvent input +
BlackBoxEvent input +
Reaction input +
Reaction requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
BlackBoxEvent requiredInputComponent +
Polymerisation requiredInputComponent +
FailedReaction requiredInputComponent +
Depolymerisation requiredInputComponent +
CandidateSet hasCandidate +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.