Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'OpenSet'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType 1 INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE Compartment PhysicalEntity ALL INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasMember + INSTANCE PhysicalEntity EntitySet   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
isOrdered 1 OTHER N/A EntitySet   ENUM('TRUE','FALSE')
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
referenceEntity 1 INSTANCE ReferenceEntity OpenSet ALL INTEGER(10) UNSIGNED
relatedSpecies + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'OpenSet' instances

Class name Attribute name Cardinality
Polymer repeatedUnit +
Complex inferredTo +
OpenSet inferredTo +
DefinedSet inferredTo +
PhysicalEntity inferredTo +
OtherEntity inferredTo +
RNADrug inferredTo +
CandidateSet inferredTo +
GenomeEncodedEntity inferredTo +
EntitySet inferredTo +
ProteinDrug inferredTo +
ChemicalDrug inferredTo +
SimpleEntity inferredTo +
Drug inferredTo +
EntityWithAccessionedSequence inferredTo +
Polymer inferredTo +
CandidateSet hasCandidate +
EntityVertex representedInstance 1
GroupModifiedResidue modification 1
CrosslinkedResidue modification 1
InterChainCrosslinkedResidue modification 1
IntraChainCrosslinkedResidue modification 1
PositiveRegulation activeUnit +
Regulation activeUnit +
Requirement activeUnit +
NegativeGeneExpressionRegulation activeUnit +
PositiveGeneExpressionRegulation activeUnit +
NegativeRegulation activeUnit +
CatalystActivity activeUnit +
EntityFunctionalStatus physicalEntity 1
CatalystActivity physicalEntity 1
BlackBoxEvent entityOnOtherCell +
FailedReaction entityOnOtherCell +
Reaction entityOnOtherCell +
Depolymerisation entityOnOtherCell +
Polymerisation entityOnOtherCell +
Complex entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
_Deleted replacementInstances +
VertexSearchableTerm termProvider +
CandidateSet hasMember +
DefinedSet hasMember +
OpenSet hasMember +
EntitySet hasMember +
Reaction output +
BlackBoxEvent output +
FailedReaction output +
ReactionlikeEvent output +
Depolymerisation output +
Polymerisation output +
PositiveGeneExpressionRegulation regulator 1
NegativeRegulation regulator 1
Regulation regulator 1
PositiveRegulation regulator 1
NegativeGeneExpressionRegulation regulator 1
Requirement regulator 1
ReactionlikeEvent requiredInputComponent +
Depolymerisation requiredInputComponent +
Polymerisation requiredInputComponent +
Reaction requiredInputComponent +
FailedReaction requiredInputComponent +
BlackBoxEvent requiredInputComponent +
Complex hasComponent +
OpenSet inferredFrom +
DefinedSet inferredFrom +
Complex inferredFrom +
PhysicalEntity inferredFrom +
OtherEntity inferredFrom +
RNADrug inferredFrom +
GenomeEncodedEntity inferredFrom +
EntitySet inferredFrom +
CandidateSet inferredFrom +
SimpleEntity inferredFrom +
EntityWithAccessionedSequence inferredFrom +
Drug inferredFrom +
Polymer inferredFrom +
ChemicalDrug inferredFrom +
ProteinDrug inferredFrom +
ConcurrentEventSet focusEntity +
FailedReaction input +
BlackBoxEvent input +
Reaction input +
Polymerisation input +
Depolymerisation input +
ReactionlikeEvent input +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.